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Anatomy of Cannabis

List of contents

  1. The Cannabis seed
  2. Roots
  3. The root crown
  4. Stem and nodes
  5. Leaves and petioles
  6. Flowers
  7. Trichomes

When it comes to cannabis, the part of the plant that gets all the attention is naturally the bit we’re all growing for: the flowers. But while it’s easy to be enamored with the beautiful frosty flowers we shouldn’t overlook the rest, because behind the bud there’s a whole plant, with all its component parts, each playing an essential role in bringing us our precious harvest.

The better we know the anatomy of cannabis, the more success we’ll have cultivating it, and the happier we’ll be with the results! For these reasons here we’re going to take a closer look at the cannabis plant and identify all the different elements of its anatomy to help you get to know this wonderful plant a little bit better.

Anatomy of cannabis
Anatomy of cannabis: 1, male flower, enlarged detail; 2, pollen sac; 3, pollen sac; 4, pollen grain; 5, female flower with bract; 5, female flower, bract removed; 6, female seed cluster, longitudinal section; 7, seed with bract; 8, seed without bract; 9, seed without bract; 10, seed cross section; 11, seed longitudinal section; 12, seed without hull (Franz Eugen Köhler 1887)

The Cannabis seed

For most of us, our introduction to cultivation comes when we buy or are gifted some cannabis seeds for the first time, so let’s set out on our examination of cannabis anatomy starting with the seed.

A healthy, mature cannabis seed will be well-rounded in shape with one pointed end and one flat end. They have a tough outer casing that is rigid to the touch, preventing the seed from being easily crushed. A seam separates the two halves of the shell (also known as the hull or pericarp) and is where the seed opens during germination.

Depending on their genetics, seeds can vary greatly in size, from really tiny (800 seeds per gram) to absolutely massive (15 seeds per gram). In mature seeds the outer shell should be covered with attractive dark markings known as “tiger stripes” which, like snowflakes, are unique to each seed and are in reality a thin layer of cells coating the seed and can be rubbed off easily, revealing the true tan/beige colour of the seed beneath.

Detailed view of a cannabis seed
Detailed view of a cannabis seed

Inside the seed we will find the embryo of the plant. The embryo contains the root, or radicle as it’s known while still in the seed, and the cotyledons, those first, fat, rounded embryonic leaves containing the seed’s food reserves for early development. Cannabis is a “dicot” plant, meaning it has two cotyledons. Situated in between the cotyledons, surrounded by the first two true leaves is the apical tip, the point from which the plant will continue growing once germinated.

Roots

Roots
Cannabis roots

When we germinate a cannabis seed, the first thing that emerges from the opened seed will be the tap root which will begin to grow downwards, seeking out moisture and nutrition and colonizing the substrate. The root system has three main purposes: anchor the plant in the substrate, provide it with water and the nutrients, and it also acts as storage for sugars and starches produced by photosynthesis. Roots are the foundation for healthy plants.  Without healthy roots we won’t harvest beautiful flowers!

Roots themselves can be classified into three types. Firstly the tap root, which is the principal component of the root system, the subterranean counterpart to the plant’s main stem, pushing vertically downwards and shooting off branches as it grows. These branches are the second type, the fibrous roots, which branch off from the tap root, extending outwards to form an underground network approximately the same size as the aerial part of the plant. A third type of roots are adventitious roots. These are the thick roots that sometimes sprout from the stem just above ground. These are the roots that make it possible to reproduce plants by taking cuttings and cloning them.

Adventitious root
Adventitious root growing from the stem of a clone

Cannabis plants grown from seed will start life with a tap root system that develops into a fibrous root system. Clones don’t have a tap root, starting instead with adventitious roots before developing a fibrous root system. In all cases, a root system needs an adequate balance of moisture and air to be healthy. If care and conditions are right we will be able to see thick, bright white roots with plenty of fine hairs when we transplant.

The root crown

The root crown is the part of the plant where the roots and stem join. It is sometimes called the collar, or neck. This is a vital part of the plant, the dividing line between upward and downward growth, where the vascular system switches from roots to stem, and one of the places in the plant where most cell division takes place.

The root crown is situated very close to the surface where aeration is at its most. Some growers will transplant with the crown buried well below the surface. This encourages adventitious roots to sprout from the buried section of stem. It’s good way to deal with those leggy seedlings that stretched to get to the light and ended up too tall.

Stem and nodes

The stem of the cannabis plant is the part responsible for keeping the plant upright and for supporting the weight of the plant. It contains the vascular system which works to carry moisture and nutrients from the roots to the leaves via xylem cells. It also transports the sugars and starches produced via photosynthesis around the plant for use or storage via the phloem cells.

Stem cross section
Cross section of stem showing a node

The stem is divided by nodes, with the space between them being the internode. Seedlings will begin by growing opposite pairs of nodes and leaves. As time passes the nodes will start to grow alternately, a sign the plant is mature and ready to flower.

Taller, stretchier Sativa plants will have a larger internode spacing than squat, compact Indica varieties. Environmental factors can also influence internode space. The nodes are where the first flowers appear (pre-flowers). It’s the first place growers look when trying to determine the sex of plants grown from regular seeds. The stipule is The small, narrow spear-like leaf growing at each node

Cut clones with at least one node to be planted below ground. The node will produce auxins and begin root development in the undifferentiated meristem cells.

Leaves and petioles

Cannabis leaves are palmately compound  with anything from 3 to 13 veined, serrated leaflets or fingers. Indica varieties will generally have wider and shorter leaflets of a lush dark green colour, but fewer in number. Sativas will have longer, narrower leaflets and can be of a lighter green shade. Cannabis is a hugely diverse genus and there are exceptions to this rule, most notably the Ducksfoot variety. Autoflowering varieties will tend to have smaller leaves, with the shape depending on the individual genetics. As a general rule leaning more to the Indica side.

Leaf types
Leaf and structure comparison of the different cannabis species

A cannabis plant will have large and small fan-type leaves, and also sugar leaves. Sugar leaves are the small, resin-covered leaves that protrude from the bud.

Leaves
Leaves from two different hybrids

As a seedling grows, each set of leaves has an increasing, odd number of leaflets. The first set of leaves above the cotyledons will almost always have a single leaflet. The second pair will have three and so on until the plant reaches the usual number as dictated by it’s genetics.

The leaflets join at the point known as the rachis, from where they attach to the stem or branch by a leaf-stem known as the petiole. Petioles can be of varying length depending on the variety and can naturally vary in colour from green to dark purple, although in normally green plants a purple petiole can often be a sign of a phosphorous deficiency.

The fan leaves function both as solar panels and air conditioning for the plants, with the darker green upper side of the leaf producing energy via photosynthesis and the underside regulating internal processes via stomata, tiny pores that absorb the CO2 needed for photosynthesis and at the same time release water and oxygen. The stomata will close at night to conserve moisture and during the day will respond to heat and humidity levels, opening and closing to constantly balance internal moisture levels with external environmental conditions and keep metabolic functions working.

Flowers

Cannabis is dioecious, meaning the male and female reproductive organs are on different plants. Unless we’re planning on doing some home breeding and making seeds, we won’t be growing any male plants to full maturity, but it’s important to be able to identify them, even if we’re growing exclusively from feminised seeds, just in case.

Female pre-flowers and male flowers
Female pre-flowers on the left, male flower cluster on the right

The male, staminate flowers effectively resemble green balls on sticks, composed of five petals which open to reveal five pollen-producing stamens. They grow in long, loose bud clusters from internodes on the branch. Males die shortly after releasing pollen. Male flowers contain low levels of cannabinoids and terpenes.

Female pistillate flowers are tight clusters of bracts. Bracts are the small, teardrop-shaped green petals referred to as calyxes. Each bract or calyx contains the ovary and the pistillate hair or stigma, which is what growers call the pistil. The pistil is the part of the flower that catches airborne pollen. Once pollen lands on the stigma, it is transported down the pollen tube to the ovary where fecundation takes place and the seed is formed, filling and swelling the bract as it grows. The seeds are usually mature after a further 4-6 weeks time.

Both cannabis flowers and leaves develop beautiful colours
Both cannabis flowers and leaves develop beautiful colours

After pollination, female plants will devote their energies towards seed production. This means that seeded buds will have lower levels of cannabinoids and terpenes.

Trichomes

Cannabis trichomes
Trichomes clustered on a bud

Botanists are still unsure as to exactly why cannabis plants produce such a large quantity of trichomes. However most agree that they most likely have the function of protecting the flowers and developing seeds.

Trichomes have two different basic types: Glandular and non-glandular. Non-glandular trichomes grow without a trichome head or gland, having the appearance of small hairs and mainly developing on stems, leaves, petioles and to a lesser extent on the flowers themselves. Glandular trichomes possess the resinous gland which secrete the cannabinoids and terpenes.

Glandular trichomes
Glandular trichomes under the microscope

The three kinds of Glandular trichomes are: bulbous, capitate-sessile, and capitate-stalked. Capitate-stalked are the largest, most numerous trichomes with the greatest cannabinoid content.

As the flowers mature, the trichomes will change colour, starting out transparent, passing through a milky-white stage nearing maturity and going on to become amber coloured when fully mature. Different growers will harvest their flowers depending on personal taste and the effect they’re looking for, but on our blog you can read a useful guide to harvesting according to trichome ripeness, which will help you to bring your crop down at the optimum moment.

Hopefully after reading this you’re now a bit more familiar with the anatomy of the cannabis plant and will become a better grower as a result… Knowledge is power!

Happy growing!

Anatomy of Cannabis